No, CH has no control panel that I know of, it was setting it up in Aces High (the Aces High settings), the Aces High joystick settings area, that I was talking about.
My above discussion of which is device 1 and which is device 2 is not a problem of CH, by the way, it's the way Windows does it when you plug things in. It would happen to any other joysticks, too -- it just depends on which order you first plug them in.
The lesson: the very first time you are going to plug anything in, make sure you plug in the joystick first, and the pedals (or whatever) second. After you do it that first time, it's set, and you can plug them in and out later in any order you want.