Well, personally, the Jug's susceptibility to main fuel tank hits typically results from low 6 shots in my experience. In that respect, the Aux tank should be the first one hit, as bullets would practically have to travel through the entire length of the fuselage and through the cockpit to hit the main. That said, I have no idea how AH selects the damaged components that are placed in the fuselage. Also, I don't know if anyone could collect reliable data that shows that the Main gets hit more than the Aux.
One thing good thing about the P-47N is that you also have the option to leave a little gas in the wing tanks if you take 100% internal fuel. At 75%, there's really not enough gas in the wing tanks to give any credible additional fuel. Of course, loading all the fuel in the wing tanks seems to affect the roll rate. Personally, I typically load 75% with no drop tanks on P-47N sorties. If I'm trying to "furball" it or use it for attack sorties, I typically only load 50%