Have you assigned all the buttons in AH to all the buttons on the stick and Throttle?
In the left hand box you have all the AH assignments like axis, rudder, throttle buttons 1-32 etc.
They must be assigned to a corresponding button in the right side box like throttle Hat1,button 1-12 Combat stick Hat1, button 1-12 etc
I use the control manager software, as it is quite flexible.
Hope it helps.
RGJ