Gotta second Skuzzy, you want that lower-front fan sucking air in. If you reverse it, not only would you be forcing the coolest air in the case out- but you would be unable to pull the coolest air in your house in from the floor, and if you have your system resting on wood or tile floors- you are losing the benefit of cooler air conducting from below your floor.
Most mobos have a couple fan hook ups, but if they don't you can always go to Radio Shack or something like that and pick up some cheap fans that plug into the power supply's array of connections and splitters if need be. (Not true splitters, just plug them into one power supply connector and you have 2 connections instead of one now).
You wanna clear out as much debri as you can, so the case has a lot of open area to get the air circulating. What I did was wrap all power connections that were too long around the main spar of the PC case (runs from the Power Supply to the upper/front CD bays) as tightly as I could until there was only enough excess wire to plug them into the CD-ROMs. The IDE cables stayed out of the way on their own in my case/mobo combo.
For fans I have one blowing on the CPU (standard Athlon XP heatsink/fan), one blowing on the motherboard controller (standard with my mobo), a dual fan power supply (one sucks air in from the bottom of the power supply/above the CPU and one blows out the back), one fan at the bottom/front of the case that sucks air in, one that comes standard with the Nvidia GF4 on the GPU, and finally one small high RPM fan strapped on via use of plastic wrapped twisty-ties that rests very well on the top of the SB Live! and Gf4 to blow down across the memory heat sinks of the GF4 and towards the GPU to bring more air to it.
Haven't had any heat problems, I open up the case every 2 weeks or so to clean the fans/heatsinks of dust/fur (dog and 2 cats).
Athlon XP 2000+
Epox 8KTA3+Pro
PNY GeForce 4 Ti4200 (300core/545mem)
SB Live!
768MB PC133 SDRAM (3x256sticks)
Maxtor 7200RPM 30GB HDD ATA-100
A1 Power 400W Dual Fan PS
-SW