Laz,
What little I know of it.... when you set it up in AH.. it will remember how you have them set.  
I am using the SAITEK X45....  In the JS program (not AH) I programmed key presses for each position on my view hat.  Then I have a pinkie button so I can do combinations for the up angles. 
Pinkie is mapped to number 5
Hat has 4 for left.... 6 for right..... Press pinkie and move hat to the left... I am sending 5, 4 and I get the UP LEFT view.
As for the axis I programmed them in AH.  The throttle, rudder, and roll and pitch.. I used the AH programming.
I also programmed my other buttons to send key presses because I don't think AH can "see" all the buttons.... So I have my WEP on one button, flaps on another, trim on a hat, things like that.  
Don't know if this explanation helped... don't suppose it could hurt tho.  Good Luck...