Just becuase it has mechanical, hydraulic, pneumatic or electrical flaps doesn't mean they can deploy at any speed. You have to look at what pressures are being placed on the surface and what the surface is made out of. You deploy them at to fast of a speed and your going to disenegrate the surface.
Even in todays day and age modern fighters surfaces will rip apart if deployed at to fast of a speed. Just as an example the F-15s flaps are a 2 way deployment, up or down. They also have a safety system built in to keep from destroying the flap surface and/or the hydrualic actuators that deploy them. They will not deploy over 230kts and if left in the down position while going through that speed the will automatically retract. This is due to a flap airspeed monitoring switch. When it senses speeds above 230kts it automatically unlocks the control valve in the actuator. The fluids then bypass so that air pressure will force the flaps to the up position.
Simply saying the 109 should be able to deploy flaps at any speed is ridiculous. Just because it has manual gearing doesn't mean it can deploy at any speed.