Silverfox,
I applaud your testing regimine; it looks like you did an extremely thorough job, up to and including multiple runs and a nice average of the results.
These are completely fascinating results. Though I'm not entirely sure that even the minor recorded differences are outside the margin of error (I can run 3dMark 10 times in a row and get results that vary by about 1.2%), I think its pretty significant that the "better cooled" values are ALWAYS faster than the "worse cooled, bit still within spec" numbers, except in one case, where there's a tie.
The "better cooled" benchmarks ALWAYS work out to be .95% .70% better than the "warm" benchmarks. As you said, neglible, but still (probably) a trend.
Of course, by doing the "good cooling" you can now overclock your rig to the point where the temperatures rise to the "warm" level, and get that much more performance. THAT's the point of extra cooling, I think.
Again, I applaud your work. If I were you, I'd email these results to Anandtech or Tomshardware; I think they're that interesting.
-Llama