Thanks StarOfAfrica.
The X36F has two connectors at the end of its cord, one is USB and the other is normal gameport. When I plug the joy alone to the computer using the gameport it is recognized as a joy (doesnt work, but is recognized), so I tried to plug the joy to the pedals port and pedals to the computer gameport, but joy was not recognized as connected this way.
My previous setup was something weird. X45 as normal joy/throttle and then a combo of analog thrustmaster FLCS+TQS+CH pro pedals. Yerterday, the FLCS said bye-bye and TQS + pedals alone are no more recognized as a connected joy. So, it seems I will need to buy an analog joy, the problem is that nobody sells analog joys these days.