One doesn't equal the other here, I think a lot of people are missing that. To prosecute the guy who filled in the applications is one thing, it's fairly likely and would be fairly easy to prove. To go beyond that and throw out all of the absentee ballots, they must:
Prove those people would not have voted if their ballot application would have been simply rejected
and...
Prove there was election fraud, not simply negligence. This would be something like preventing democrats the same access. In court today they failed on this count, after admitting the democrats never asked for access, because as their applications were pre-printed with the IDs they did not need it.
The question on the Judge's conflict (forget her name offhand), the alleged conflict is that Jeb Bush passed her up for promotion recently. She was asked to recuse herself but declined.
In other news some have asked if the shoe were on the other foot, would we not be sceaming to follow every legal option. Well, it is somewhat, with the FL legislature debating to (completely within its constitutional rights) send a group of republican electors regardless of the court outcomes. This, while legal, is not worth the political price. If it comes to that they best let Gore win, or I'm looking for new representation.