I would add direct helm and speed control to the fleet, to make it easier and quicker to take evasive action. It should be a hanger choice, and would only be active when a person was actually sitting at the helm. As soon as a person leaves the helm, the TG goes back to following any current waypoints. This would not replace the current TG command system; it would simply allow someone who wants to commit the time to take the wheel and engine throttles. Regarding engine speeds, there would only be a couple of choices to select from. With no one at the helm, the standard fleet speed would be 24 knots (i.e. this is the speed it would always be at when traveling waypoint to waypoint). The helmsman would be able to select from the following speed settings using the ships telegraph handles: Ahead Slow = 12 knots (good for trolling off shore and bombarding things, but awful if you want to get a heavy fighter or attack plane into the air); Ahead Standard = 24 knots; Ahead Flank = current normal speed of the TG (around 32 knots, I think).
See a strike inbound? Click Hanger, click "Helm", hit "H" to spawn at the helmsman's station on the bridge. This station could have a radar repeater, a compass, the engine telegraph, and a ship's wheel.