During Red Storm scenario our bomber groups ran into a problem like that once.... Only it didn't happen from the exact same field later on. It happened during a very heavy part of the action with lots of bombs going off, lots of fighters engaged, and a heavy GV fight going on. During this time, we lost a lot of drones and wasted much time landing again to pick them up (it was a scenario, we needed all the bombs we could get on target!).
However, later after some of the heavy fighting went down to a dull roar, we were able to up from the same field with no problems.
Ever since then I have suspected that the server load/lag/congestion plays some role in losing a bomber drone on takeoff. When did you lose yours (Titanic Tuesday, perhaps?), and do you recall if it was laggy or perhaps just a really busy prime time for the server to be used?