If I may...
First, Aluminum does not rust, it corrodes to fine white powder (in most cases)...the boon of all things aviation related.
Second, The color of the interior of U.S. cockpits varied over the 4 years the United States was involved in WWII. The color was not titled "zinc chromate yellow" or green....just zinc chromate. You'll find both yellow and green in many U.S. WWII era aircraft depending on whether or not the area in question is exposed to the elements or not. Incidentally, "zinc chromate green" is made by combining black with the natural yellow of the zinc chromate...it was tinted in response to a military order IIRC. Consequently, there were many shades of interior green that meet the specifications issued by the U.S. Military. P-47's built by Republic in Farmingdale and Evansville had dull dark green cockpits, nowhere near the color of what you think of as interior green (similar to FS 34092). Only the P-47G's built by Curtiss in Buffalo, NY came with cockpits painted with the interior green color (FS 34151 is a good example). Those P-47's were of substandard quality and were never issued to fighting units, they remained in the United States as training aircraft.
Third, The color of Japanese aircraft cockpits varied greatly during that same time. The A6M Reisen cockpit color varied by manufacturer, Mitsubishi being a green similar to the U.S. interior green and Nakajima built examples being a lighter grey-green color. No A6M ever had an aotake cockpit which is the light blue-green that we see in the cockpit of the A6M in game. Kawanishi N1K aircraft had a medium-dark green that the in-game aircraft captures fairly well. the Kawasaki Ki-61 Hien has a tan colored cockpit (similar to the Luftwaffe RLM 79) that the in-game aircraft captures well. Ki-84 aircraft had three different colors in the cockpit depending on when it was built. The first 250 preproduction aircraft were built with Aotake (blue-green) cockpits. The mid-late war Ki-84 Hayate had dark green cockpits similiar to the exterior green of the airframe. The last examples were built without any interior paint whatsoever; they were delivered with natural metal cockpits, some having red oxide primer seats. I am not familiar with the interior of the Ki-67 but since it was made by Mitsubishi, it probably had a medium green interior similar to what the A6M had. That is a guess on my part, it could be almost anything.
Aotake, or the blue-green translucent laquer corrosion preventative was used throughout the Japanese aircraft industry in all areas of the aircraft but was overpainted in cockpit and wheel well areas again, depending on the make and model aircraft. No, it would not be seen if the green paint wore off, it disappeared with the paint and left the bare aluminum behind.