The problems that were noted were addressed. Most of the complaints now seem to be the loss of the custom default position which I believe was unintentional.
I also have this problem with the trackir and the P40-e. You cannot move your position up in the p40. Even worse, my FSO assignment tonight was supposed to be the p40. That is a real bummer. Please fix this issue soon.
You could have checked here http://bbs.hitechcreations.com/smf/index.php/topic,331757.0.html and run the game with the new test setup where it is fixed.