I've noticed that my rudder pedals arent active at start up. I have auto take off on by default and the pedals dont move when tested on the runway,as soon as I'm in the air and move my JS to turn off auto take off the rudder pedals become active.
At first I tried to calibrate,re-activate the yaw axis ect. and nothing seemed to matter,then I discovered that as soon as auto take off is disabled the rudders seem to become active.Not sure if that was part of a game patch to stop twist rudders from turning off auto pilot.
Aztec,try turning off auto take off,just move your JS,then test rudder pedals and see if that helps,plz let us know the results.
Seems you have resolved the issue while I was posting!