Ok yours are pivots then, so the pots have to be turned to the end of their travel, opposite of the way the gear on the pedal is going to make them move, maybe 1 toothe engaged maybe two so that at the end of the pedals trave the pot has turned as far as its going to, have no idea how many turn pots they are.
Make sure you have soldered up the wires the same way they came off, and if the right hand or left hand lug was soldered to the center lug on the old pots that will need to be done to the new ones as well, when soldering make sure not to have the pedals connected to your system, if you have an old soldering iron or gun you could induce a voltage into your system from the tip of the gun.