At least some of the claims made against FIFA are misleading.
Regarding the Iraqi torture incident, FIFA sent an investigation team to Iraq, interviewed the players who had alegedly been tortured, and gave them medical examinations. No evidence of torture was found.
In regards to Afghanistan, they dropped out of the world sprots scene in the 80s, by the time of the Taliban takeover they were inactive, and had no contact with FIFA whatsoever.
Most importantly, FIFA did not suggest suspending Israel from any competition. They said they were considering what action to take, but nothing more than that. The only action they are taking is to pay for the pitch to be repaired.