I would like to see the color of the player icon on the map to be adjustable, just like you can adjust the colors of other GUI items. Until then, just know that every time the clipboard is opened, your location is centered on the map. If you keep the clipboard open a lot, just close it and re-open it to get yourself centered.
I would actually like to see the player icon either smaller or be an outline. There are many times that I'm over my flashing base or in a GV near my flashing town, but cannot tell if the town stops flashing because my plane icon on the map is covering the town dot.